STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
soxW[O] COG2143 Thioredoxin-related protein. (188 aa)    
Predicted Functional Partners:
soxS
SoxS.
 
     0.926
soxX
Monoheme Cytochrome c SoxX.
 
     0.918
soxY
Sulfur oxidation Y protein; [S] COG5501 Predicted secreted protein.
 
   
 0.907
soxZ
Sulfur oxidation Z protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
     0.891
soxA
Diheme Cytochrome c SoxA; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
     0.882
EEB84344.1
YeeE/YedE domain protein; [R] COG2391 Predicted transporter component.
 
     0.864
ccdA
[OC] COG4232 Thiol:disulfide interchange protein.
 
   
 0.843
soxC
Sulfite dehydrogenase SoxC protein; [R] COG2041 Sulfite oxidase and related enzymes.
 
     0.834
soxD_1
[C] COG3474 Cytochrome c2.
 
     0.832
soxB_1
Sulfur oxidation B protein; [F] COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases; Belongs to the 5'-nucleotidase family.
 
     0.830
Your Current Organism:
Roseobacter sp. GAI101
NCBI taxonomy Id: 391589
Other names: R. sp. GAI101
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.