STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EEB85862.1Sensors of blue-light using FAD superfamily; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit. (108 aa)    
Predicted Functional Partners:
EEB84672.1
MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor; [T] COG2202 FOG: PAS/PAC domain.
 
 0.903
EEB82642.1
Sensory box sensor histidine kinase/response regulator; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
 
 0.893
EEB86404.1
Sensory transduction regulatory protein; [T] COG0642 Signal transduction histidine kinase.
  
 0.887
fixL
Sensor histidine kinase; [T] COG2202 FOG: PAS/PAC domain.
  
 0.768
EEB82635.1
Sensor histidine kinase/response regulator; [T] COG0642 Signal transduction histidine kinase.
  
 0.696
EEB83297.1
[TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
  
 0.666
EEB86382.1
Sensor histidine kinase/response regulator; [T] COG0642 Signal transduction histidine kinase.
   
 0.590
EEB84321.1
[T] COG2199 FOG: GGDEF domain.
  
 
 0.576
EEB83158.1
[T] COG2200 FOG: EAL domain.
  
 
 0.555
EEB82472.1
HAMP domain protein; [NT] COG0840 Methyl-accepting chemotaxis protein.
  
 
 0.555
Your Current Organism:
Roseobacter sp. GAI101
NCBI taxonomy Id: 391589
Other names: R. sp. GAI101
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