STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pcaI3-oxoadipate CoA-transferase subunit A protein; [I] COG4670 Acyl CoA:acetate/3-ketoacid CoA transferase. (235 aa)    
Predicted Functional Partners:
EEB84715.1
[I] COG2057 Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit.
 0.999
dxnH
[I] COG2057 Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit.
 0.999
pcaF
Beta-ketoadipyl CoA thiolase; [I] COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.961
EEB84445.1
Peroxisomal bifunctional enzyme; [I] COG1250 3-hydroxyacyl-CoA dehydrogenase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 
 0.787
EEB85087.1
3-hydroxyacyl-CoA dehydrogenase, C-terminal domain family; [I] COG1250 3-hydroxyacyl-CoA dehydrogenase.
  
 
 0.787
EEB82949.1
Peroxisomal bifunctional enzyme; [I] COG1024 Enoyl-CoA hydratase/carnithine racemase.
  
 
 0.785
mvaB
hydroxymethylglutaryl-CoA lyase; [E] COG0119 Isopropylmalate/homocitrate/citramalate synthases.
  
 
 0.779
adc
Putative acetoacetate decarboxylase; Catalyzes the conversion of acetoacetate to acetone and carbon dioxide; Belongs to the ADC family.
    
 0.739
bhbD
[I] COG1250 3-hydroxyacyl-CoA dehydrogenase.
  
 
 0.713
EEB84581.1
Phosphate acetyltransferase; [C] COG0280 Phosphotransacetylase.
    
 0.702
Your Current Organism:
Roseobacter sp. GAI101
NCBI taxonomy Id: 391589
Other names: R. sp. GAI101
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