STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pcaI3-oxoadipate CoA-transferase subunit A protein; [I] COG4670 Acyl CoA:acetate/3-ketoacid CoA transferase. (235 aa)    
Predicted Functional Partners:
EEB84715.1
[I] COG2057 Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit.
 0.999
dxnH
[I] COG2057 Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit.
 0.999
pcaF
Beta-ketoadipyl CoA thiolase; [I] COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.955
mvaB
hydroxymethylglutaryl-CoA lyase; [E] COG0119 Isopropylmalate/homocitrate/citramalate synthases.
  
 
 0.772
EEB84445.1
Peroxisomal bifunctional enzyme; [I] COG1250 3-hydroxyacyl-CoA dehydrogenase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 
 0.750
EEB85087.1
3-hydroxyacyl-CoA dehydrogenase, C-terminal domain family; [I] COG1250 3-hydroxyacyl-CoA dehydrogenase.
  
 
 0.750
EEB82949.1
Peroxisomal bifunctional enzyme; [I] COG1024 Enoyl-CoA hydratase/carnithine racemase.
  
 
 0.750
adc
Putative acetoacetate decarboxylase; Catalyzes the conversion of acetoacetate to acetone and carbon dioxide; Belongs to the ADC family.
    
 0.700
bhbD
[I] COG1250 3-hydroxyacyl-CoA dehydrogenase.
  
 
 0.679
EEB84563.1
Beta-ketoadipate pathway transcriptional regulator, PcaR/PcaU/PobR family; [K] COG1414 Transcriptional regulator.
 
  
 0.652
Your Current Organism:
Roseobacter sp. GAI101
NCBI taxonomy Id: 391589
Other names: R. sp. GAI101
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.