STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
expEHypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit; putative protein. (289 aa)    
Predicted Functional Partners:
EEB83960.1
Hypothetical protein.
       0.773
EEB86310.1
Peptidase M23B; [D] COG4942 Membrane-bound metallopeptidase.
   
   0.747
EEB86127.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.736
ribB
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
  0.719
EEB84672.1
MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor; [T] COG2202 FOG: PAS/PAC domain.
    
 0.640
mcpT_1
Methyl-accepting chemotaxis protein; [GEPR] COG0477 Permeases of the major facilitator superfamily.
    
  0.606
EEB83405.1
Putative regulatory protein, possibly two-component response regulator; [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
 
  
 0.579
EEB82642.1
Sensory box sensor histidine kinase/response regulator; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
    
 0.574
mcpA_3
[NT] COG0840 Methyl-accepting chemotaxis protein.
    
  0.553
EEB83443.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
    0.496
Your Current Organism:
Roseobacter sp. GAI101
NCBI taxonomy Id: 391589
Other names: R. sp. GAI101
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