STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EEB86051.1Transcriptional regulator, TetR family; [K] COG1309 Transcriptional regulator. (262 aa)    
Predicted Functional Partners:
EEB83739.1
[G] COG0588 Phosphoglycerate mutase 1.
       0.661
EEB83384.1
Putative reductive dehalogenase subfamily protein; [C] COG1600 Uncharacterized Fe-S protein.
  
 
 0.477
EEB85045.1
ferredoxin:Oxidoreductase FAD/NAD(P)-binding:Oxidoreductase FAD-binding region; [C] COG0633 Ferredoxin.
   
 
 0.437
EEB86122.1
Class II aldolase/adducin domain protein; [G] COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases.
       0.424
Your Current Organism:
Roseobacter sp. GAI101
NCBI taxonomy Id: 391589
Other names: R. sp. GAI101
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.