STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EEB86052.1Drug resistance transporter, Bcr/CflA subfamily; [GEPR] COG0477 Permeases of the major facilitator superfamily. (414 aa)    
Predicted Functional Partners:
EEB84467.1
Type I secretion outer membrane protein, TolC family; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
   
 0.547
EEB82576.1
RND efflux system, outer membrane lipoprotein, NodT family; [V] COG1566 Multidrug resistance efflux pump; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
   
 0.537
EEB83791.1
Outer membrane efflux protein.
   
  0.516
tagD
Glycerol-3-phosphate cytidyltransferase; [MI] COG0615 Cytidylyltransferase.
       0.510
EEB83103.1
Multidrug resistance efflux pump; [M] COG0845 Membrane-fusion protein.
   
 0.506
EEB82784.1
[V] COG1566 Multidrug resistance efflux pump.
   
 0.506
EEB85360.1
Type I secretion membrane fusion protein, HlyD; [M] COG0845 Membrane-fusion protein.
   
  0.485
EEB85912.1
Type I secretion membrane fusion protein, HlyD family; [L] COG0419 ATPase involved in DNA repair.
   
  0.485
EEB86064.1
Type I secretion membrane fusion protein, HlyD family; [V] COG1566 Multidrug resistance efflux pump.
   
  0.485
EEB86409.1
Conserved hypothetical protein.
   
  0.485
Your Current Organism:
Roseobacter sp. GAI101
NCBI taxonomy Id: 391589
Other names: R. sp. GAI101
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