STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
smoS[IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases). (269 aa)    
Predicted Functional Partners:
EEB83773.1
Bacterial extracellular solute-binding protein; [G] COG1653 ABC-type sugar transport system, periplasmic component.
 
     0.931
EEB86036.1
Peptidase M24; [J] COG0024 Methionine aminopeptidase.
 
 
   0.904
EEB83808.1
Non-ribosomal peptide synthetase, putative; [IQ] COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
  
 0.875
EEB85061.1
Bifunctional carbohydrate binding and transport protein; [G] COG1879 ABC-type sugar transport system, periplasmic component.
 
     0.872
EEB84108.1
Bifunctional carbohydrate binding and transport protein; [G] COG1879 ABC-type sugar transport system, periplasmic component.
 
     0.822
EEB83654.1
Hypothetical protein.
 
     0.799
EEB85871.1
Inner-membrane translocator; [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components.
 
     0.773
EEB83202.1
Inner-membrane translocator; [G] COG4211 ABC-type glucose/galactose transport system, permease component.
 
     0.732
EEB86303.1
Glutamate synthase domain family protein; [C] COG2218 Formylmethanofuran dehydrogenase subunit C.
     
 0.716
EEB83473.1
Short-chain dehydrogenase/reductase SDR; [IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
  
  0.656
Your Current Organism:
Roseobacter sp. GAI101
NCBI taxonomy Id: 391589
Other names: R. sp. GAI101
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