Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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EEB83190.1Transcriptional regulatory protein; [K] COG2207 AraC-type DNA-binding domain-containing proteins. (294 aa)    
Predicted Functional Partners:
pobA
4-hydroxybenzoate 3-monooxygenase; [HC] COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases.
 
   
 0.822
EEB86303.1
Glutamate synthase domain family protein; [C] COG2218 Formylmethanofuran dehydrogenase subunit C.
    
 0.726
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.677
pobR
Transcriptional regulator, AraC family; [K] COG2207 AraC-type DNA-binding domain-containing proteins.
  
     0.644
ribB
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
     
  0.644
EEB86021.1
Phosphate acetyl/butyryl transferase subfamily, putative; [C] COG0281 Malic enzyme.
     
 0.597
EEB83332.1
Phosphate acetyl/butyryl transferase subfamily, putative; [C] COG0281 Malic enzyme.
     
 0.597
EEB84630.1
[K] COG2207 AraC-type DNA-binding domain-containing proteins.
  
     0.551
uca
Urea carboxylase; [I] COG0511 Biotin carboxyl carrier protein.
  
 
  0.493
EEB85799.1
Twin-arginine translocation pathway signal; [G] COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
       0.445
Your Current Organism:
Roseobacter sp. GAI101
NCBI taxonomy Id: 391589
Other names: R. sp. GAI101
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