STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEB86237.1Putative malonyl-CoA decarboxylase; [G] COG1593 TRAP-type C4-dicarboxylate transport system, large permease component. (410 aa)    
Predicted Functional Partners:
EEB85271.1
Tripartite ATP-independent periplasmic transporter, DctQ component; [Q] COG4665 TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
  0.964
EEB84514.1
Trap dicarboxylate transporter, dctm subunit; [G] COG1593 TRAP-type C4-dicarboxylate transport system, large permease component.
 
     0.851
EEB85080.1
[IQ] COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
 
  
  0.835
fabD
Malonyl CoA-acyl carrier protein transacylase; [Q] COG3321 Polyketide synthase modules and related proteins.
   
 
  0.828
EEB84689.1
Trap dicarboxylate transporter- dctp subunit; [Q] COG4663 TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component.
 
    0.823
uca
Urea carboxylase; [I] COG0511 Biotin carboxyl carrier protein.
    
  0.712
EEB86031.1
Regulatory protein GntR, HTH:GntR, C-terminal domain; [K] COG1802 Transcriptional regulators.
 
    0.637
EEB86410.1
Iron-sulfur cluster-binding protein; [C] COG1145 Ferredoxin.
  
  
  0.542
EEB85894.1
Tripartite ATP-independent periplasmic transporter, DctQ component; [G] COG3090 TRAP-type C4-dicarboxylate transport system, small permease component.
 
  0.478
EEB85243.1
TRAP transporter, DctQ-like membrane protein; [Q] COG4665 TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
  0.456
Your Current Organism:
Roseobacter sp. GAI101
NCBI taxonomy Id: 391589
Other names: R. sp. GAI101
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