Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EEB83193.1[IQ] COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II. (547 aa)    
Predicted Functional Partners:
EEB83808.1
Non-ribosomal peptide synthetase, putative; [IQ] COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
 
 0.926
EEB85181.1
[I] COG1024 Enoyl-CoA hydratase/carnithine racemase.
 
   0.871
EEB83008.1
[I] COG1960 Acyl-CoA dehydrogenases.
  
 
  0.787
acdB
[I] COG1960 Acyl-CoA dehydrogenases.
  
 
  0.773
EEB83039.1
[E] COG0404 Glycine cleavage system T protein (aminomethyltransferase); Belongs to the GcvT family.
 
  
  0.768
rplF
Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.715
EEB84307.1
OsmC family protein; [O] COG1764 Predicted redox protein, regulator of disulfide bond formation.
       0.701
EEB85875.1
Formate dehydrogenase, beta subunit; [C] COG4656 Predicted NADH:ubiquinone oxidoreductase, subunit RnfC.
    
   0.678
EEB82666.1
Conserved hypothetical protein; [IQ] COG0236 Acyl carrier protein.
  
  0.678
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
 0.676
Your Current Organism:
Roseobacter sp. GAI101
NCBI taxonomy Id: 391589
Other names: R. sp. GAI101
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