STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EEB83205.1[S] COG5349 Uncharacterized protein conserved in bacteria. (133 aa)    
Predicted Functional Partners:
EEB83354.1
Hydrolase, nudix family; [LR] COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes.
 
     0.806
EEB86180.1
Hypothetical protein.
       0.718
EEB85679.1
RNA polymerase sigma-70 factor; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit; Belongs to the sigma-70 factor family. ECF subfamily.
       0.649
EEB83132.1
Conserved hypothetical protein.
       0.615
EEB84609.1
Conserved hypothetical protein.
       0.577
EEB83973.1
Lysophospholipase, putative; [I] COG2267 Lysophospholipase.
  
     0.541
ctaG
Cytochrome c oxidase assembly protein CtaG; Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I; Belongs to the COX11/CtaG family.
 
     0.522
ctaA
Cytochrome oxidase assembly; Catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group; Belongs to the COX15/CtaA family. Type 2 subfamily.
 
     0.484
EEB84860.1
[S] COG5328 Uncharacterized protein conserved in bacteria; protein /AGR_C_947; Belongs to the UPF0262 family.
 
   
 0.461
EEB85838.1
Surf1 family protein; [S] COG3346 Uncharacterized conserved protein.
 
     0.452
Your Current Organism:
Roseobacter sp. GAI101
NCBI taxonomy Id: 391589
Other names: R. sp. GAI101
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.