STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEB82475.1[S] COG3181 Uncharacterized protein conserved in bacteria; bordetella uptake gene family protein, putative. (285 aa)    
Predicted Functional Partners:
EEB82647.1
Trap-t family transporter, fused small and large inner membrane subunit; [S] COG3333 Uncharacterized protein conserved in bacteria.
 
  
 0.907
EEB85165.1
Tricarboxylate transporter family protein; [S] COG3333 Uncharacterized protein conserved in bacteria.
 
  
 0.824
EEB85153.1
Tricarboxylate transport protein TctA; [S] COG3333 Uncharacterized protein conserved in bacteria.
 
  
 0.712
EEB82978.1
Trap-t family transporter, large (12 tms) inner membrane subunit; [S] COG3333 Uncharacterized protein conserved in bacteria.
 
  
 0.711
EEB84977.1
Trap-t family transporter, large (12 tms) inner membrane subunit; [S] COG3333 Uncharacterized protein conserved in bacteria.
 
  
 0.699
EEB82628.1
Hypothetical protein.
       0.661
EEB82672.1
Integral membrane protein; [S] COG3333 Uncharacterized protein conserved in bacteria.
 
  
 0.659
tctA
TctA protein; [S] COG3333 Uncharacterized protein conserved in bacteria.
 
  
 0.647
EEB82656.1
Transcriptional regulator, MarR family; [K] COG1846 Transcriptional regulators.
 
     0.583
EEB86132.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
  
 0.578
Your Current Organism:
Roseobacter sp. GAI101
NCBI taxonomy Id: 391589
Other names: R. sp. GAI101
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