STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEB82494.1Extracellular solute-binding protein, family 5; [E] COG0747 ABC-type dipeptide transport system, periplasmic component. (517 aa)    
Predicted Functional Partners:
EEB82504.1
[EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
  0.923
EEB82598.1
[EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
  0.917
EEB84789.1
[EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
  0.738
EEB85039.1
Peptide/opine/nickel uptake family ABC transporter, permease/ATP-binding protein; [R] COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase; Belongs to the binding-protein-dependent transport system permease family.
 
 0.711
EEB83862.1
[EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
  
  0.645
EEB82586.1
ABC transporter, ATP-binding protein; [R] COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase; Belongs to the ABC transporter superfamily.
 
 
  0.626
EEB83561.1
[EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
  
  0.596
EEB85374.1
[EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
  
  0.581
oppA
Putative ABC transporter oligopeptide-binding protein; [E] COG0747 ABC-type dipeptide transport system, periplasmic component.
  
     0.566
EEB82873.1
ABC transporter, membrane spanning protein (oligopeptide); [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
  
  0.565
Your Current Organism:
Roseobacter sp. GAI101
NCBI taxonomy Id: 391589
Other names: R. sp. GAI101
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