STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EEB82503.1Hypothetical protein. (311 aa)    
Predicted Functional Partners:
EEB82687.1
Radical SAM domain protein; [C] COG1032 Fe-S oxidoreductase.
 
     0.768
EEB82510.1
Radical SAM domain protein; [C] COG1032 Fe-S oxidoreductase.
 
     0.749
EEB82471.1
Methyltransferase; [QR] COG0500 SAM-dependent methyltransferases.
 
     0.619
EEB82499.1
Methyltransferase small domain superfamily protein; [J] COG2890 Methylase of polypeptide chain release factors.
       0.553
EEB82480.1
Hypothetical protein.
       0.517
EEB82493.1
Glycosyl transferase, group 1; [M] COG0438 Glycosyltransferase.
  
     0.456
EEB82668.1
Fe-S protein, radical SAM family; [C] COG1032 Fe-S oxidoreductase.
 
     0.446
fusA
Translation elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 s [...]
  
     0.416
EEB85022.1
Dsba oxidoreductase:tat pathway signal; [OC] COG0526 Thiol-disulfide isomerase and thioredoxins.
  
     0.412
Your Current Organism:
Roseobacter sp. GAI101
NCBI taxonomy Id: 391589
Other names: R. sp. GAI101
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.