STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EEB83247.1Peptidase, T4 family; [EQ] COG3191 L-aminopeptidase/D-esterase. (331 aa)    
Predicted Functional Partners:
EEB85829.1
Hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit; Tetratricopeptide repeat.
       0.790
EEB83312.1
Hypothetical protein; [R] COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily); alpha/beta hydrolase fold.
       0.773
fabG_2
3-oxoacyl-(acyl-carrier protein) reductase; [IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
 
     0.646
EEB84990.1
Peptide/opine/nickel uptake family ABC transporter, permease protein; [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
     0.580
EEB84046.1
Peptide/opine/nickel uptake family ABC transporter, permease protein; [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
    0.578
EEB86486.1
phytanoyl-CoA dioxygenase family protein; [Q] COG5285 Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin.
     
  0.466
EEB83156.1
Peptide/opine/nickel uptake family ABC transporter, ATP-binding protein; [R] COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase; Belongs to the ABC transporter superfamily.
       0.455
EEB86396.1
Conserved hypothetical protein; [R] COG5628 Predicted acetyltransferase.
       0.447
EEB83354.1
Hydrolase, nudix family; [LR] COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes.
  
     0.433
Your Current Organism:
Roseobacter sp. GAI101
NCBI taxonomy Id: 391589
Other names: R. sp. GAI101
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.