STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EEB82731.1Oligopeptide ABC transporter, ATP-binding protein; [E] COG4608 ABC-type oligopeptide transport system, ATPase component; Belongs to the ABC transporter superfamily. (331 aa)    
Predicted Functional Partners:
EEB82942.1
[EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
  0.975
EEB82770.1
[EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
  0.970
EEB82598.1
[EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
  0.919
EEB84789.1
[EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
  0.906
EEB85354.1
Binding-protein-dependent transport systems inner membrane component; [F] COG0026 Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase).
 
  0.906
oppC
[R] COG4239 ABC-type uncharacterized transport system, permease component.
 
  0.900
EEB85892.1
ABC peptide transporter, inner membrane subunit; [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
  0.896
EEB83561.1
[EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
  0.896
EEB83562.1
[EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
  
  0.891
EEB82715.1
[EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
  0.881
Your Current Organism:
Roseobacter sp. GAI101
NCBI taxonomy Id: 391589
Other names: R. sp. GAI101
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.