STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EEB82761.1[K] COG1846 Transcriptional regulators. (146 aa)    
Predicted Functional Partners:
EEB82765.1
Hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit; contains weak similarity to succinyl-CoA synthetase alpha subunit.
 
     0.715
EEB82902.1
[S] COG2122 Uncharacterized conserved protein.
 
     0.706
EEB82860.1
[E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component.
 
     0.697
EEB82771.1
Peptide synthase; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
     0.691
vanA
Vanillate O-demethylase oxygenase subunit; [PR] COG4638 Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit.
 
     0.668
EEB82703.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.656
EEB82935.1
Aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding domain protein; [C] COG1529 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs.
 
     0.633
EEB82957.1
Amidohydrolase family protein; [F] COG1001 Adenine deaminase.
  
     0.607
EEB82896.1
[E] COG0559 Branched-chain amino acid ABC-type transport system, permease components; Belongs to the binding-protein-dependent transport system permease family.
 
     0.591
soxD_1
[C] COG3474 Cytochrome c2.
   
 
  0.467
Your Current Organism:
Roseobacter sp. GAI101
NCBI taxonomy Id: 391589
Other names: R. sp. GAI101
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