Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
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experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EEB83261.1TRAP transporter, DctM-like membrane protein; [G] COG1593 TRAP-type C4-dicarboxylate transport system, large permease component. (784 aa)    
Predicted Functional Partners:
EEB84666.1
Conserved hypothetical protein; [Q] COG4665 TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
 
  0.994
EEB82985.1
Bacterial extracellular solute-binding protein, family 7; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
    0.875
EEB86079.1
Conserved hypothetical protein.
  
     0.756
degS
Sensor protein DegS; [NT] COG0840 Methyl-accepting chemotaxis protein.
 
     0.565
EEB84615.1
Conserved hypothetical protein; [H] COG0314 Molybdopterin converting factor, large subunit.
  
     0.514
narL
[T] COG4566 Response regulator.
 
     0.505
EEB82557.1
Twin-arginine translocation pathway signal; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
    0.467
EEB85498.1
OmpA domain protein; [M] COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins.
  
     0.440
EEB83092.1
Trap dicarboxylate transporter - dctp subunit; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
    0.425
EEB85799.1
Twin-arginine translocation pathway signal; [G] COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
    0.419
Your Current Organism:
Roseobacter sp. GAI101
NCBI taxonomy Id: 391589
Other names: R. sp. GAI101
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