STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEB82923.1Rhs element Vgr protein; [S] COG3501 Uncharacterized protein conserved in bacteria. (705 aa)    
Predicted Functional Partners:
EEB82728.1
Putative cytoplasmic protein,SciH; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
  
 0.990
EEB82725.1
OmpA/MotB domain protein; [N] COG1360 Flagellar motor protein.
 
  
 0.975
EEB82706.1
Type IV / VI secretion system protein, DotU family; [M] COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins.
 
  
 0.972
EEB82777.1
Conserved hypothetical protein, putative; [S] COG3157 Hemolysin-coregulated protein (uncharacterized).
 
  
 0.972
EEB82707.1
Type VI secretion protein, VC_A0111 family; [S] COG3520 Uncharacterized protein conserved in bacteria.
 
 
 0.971
EEB82823.1
Type VI secretion-associated protein, ImpA family; [S] COG3515 Uncharacterized protein conserved in bacteria.
 
  
 0.968
EEB82833.1
Type VI secretion protein, VC_A0107 family; [S] COG3516 Uncharacterized protein conserved in bacteria.
 
  
 0.950
EEB82907.1
Putative secreted protein.
 
   
 0.933
EEB82853.1
Type VI secretion protein, EvpB/VC_A0108 family; [S] COG3517 Uncharacterized protein conserved in bacteria.
 
  
 0.904
EEB82734.1
Type VI secretion system lysozyme-related protein; [S] COG3518 Uncharacterized protein conserved in bacteria.
 
  
 0.903
Your Current Organism:
Roseobacter sp. GAI101
NCBI taxonomy Id: 391589
Other names: R. sp. GAI101
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.