Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EEB83313.1Hypothetical protein. (44 aa)    
Predicted Functional Partners:
EEB82978.1
Trap-t family transporter, large (12 tms) inner membrane subunit; [S] COG3333 Uncharacterized protein conserved in bacteria.
       0.773
EEB85153.1
Tricarboxylate transport protein TctA; [S] COG3333 Uncharacterized protein conserved in bacteria.
       0.773
ggt_3
[E] COG0405 Gamma-glutamyltransferase.
       0.773
EEB83628.1
Bile acid:sodium symporter; [R] COG0385 Predicted Na+-dependent transporter.
       0.553
Your Current Organism:
Roseobacter sp. GAI101
NCBI taxonomy Id: 391589
Other names: R. sp. GAI101
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