Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EEB82405.1General amino acid ABC transporter, ATP-binding protein; [E] COG3842 ABC-type spermidine/putrescine transport systems, ATPase components. (248 aa)    
Predicted Functional Partners:
EEB86006.1
[E] COG0765 ABC-type amino acid transport system, permease component.
 
 0.988
EEB83002.1
His/Glu/Gln/Arg/opine family ABC transporter, permease protein; [E] COG4215 ABC-type arginine transport system, permease component.
 
 0.985
EEB82399.1
[E] COG0765 ABC-type amino acid transport system, permease component.
  
 0.983
EEB82443.1
Nopaline ABC transporter, permease protein; [E] COG4160 ABC-type arginine/histidine transport system, permease component.
 
  
  0.976
artI
Arginine-binding periplasmic protein 1; [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
 
 0.958
bztB
[E] COG0765 ABC-type amino acid transport system, permease component.
 
 
 0.955
bztA
Glutamate/glutamine/aspartate/asparagine-binding protein; [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
 
 0.931
EEB84564.1
[ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
 
 0.920
EEB84771.1
arginine/histidine-ABC transporter, permease protein; [E] COG0765 ABC-type amino acid transport system, permease component.
 
  
  0.871
EEB83969.1
[P] COG1122 ABC-type cobalt transport system, ATPase component.
 
  
 
0.766
Your Current Organism:
Roseobacter sp. GAI101
NCBI taxonomy Id: 391589
Other names: R. sp. GAI101
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