Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EEB82979.1 | EEB83323.1 | RGAI101_124 | RGAI101_471 | Conserved hypothetical protein. | [O] COG0435 Predicted glutathione S-transferase. | 0.612 |
EEB83323.1 | EEB82979.1 | RGAI101_471 | RGAI101_124 | [O] COG0435 Predicted glutathione S-transferase. | Conserved hypothetical protein. | 0.612 |
EEB83323.1 | EEB83996.1 | RGAI101_471 | RGAI101_1146 | [O] COG0435 Predicted glutathione S-transferase. | 2,5-diketo-D-gluconic acid reductase B; [T] COG0642 Signal transduction histidine kinase. | 0.443 |
EEB83323.1 | EEB85190.1 | RGAI101_471 | RGAI101_2341 | [O] COG0435 Predicted glutathione S-transferase. | [C] COG3038 Cytochrome B561; Belongs to the UPF0312 family. | 0.477 |
EEB83323.1 | azoR | RGAI101_471 | RGAI101_2752 | [O] COG0435 Predicted glutathione S-transferase. | Fmn-dependent NADH-azoreductase 1; Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity; Belongs to the azoreductase type 1 family. | 0.407 |
EEB83996.1 | EEB83323.1 | RGAI101_1146 | RGAI101_471 | 2,5-diketo-D-gluconic acid reductase B; [T] COG0642 Signal transduction histidine kinase. | [O] COG0435 Predicted glutathione S-transferase. | 0.443 |
EEB85190.1 | EEB83323.1 | RGAI101_2341 | RGAI101_471 | [C] COG3038 Cytochrome B561; Belongs to the UPF0312 family. | [O] COG0435 Predicted glutathione S-transferase. | 0.477 |
EEB85190.1 | azoR | RGAI101_2341 | RGAI101_2752 | [C] COG3038 Cytochrome B561; Belongs to the UPF0312 family. | Fmn-dependent NADH-azoreductase 1; Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity; Belongs to the azoreductase type 1 family. | 0.441 |
azoR | EEB83323.1 | RGAI101_2752 | RGAI101_471 | Fmn-dependent NADH-azoreductase 1; Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity; Belongs to the azoreductase type 1 family. | [O] COG0435 Predicted glutathione S-transferase. | 0.407 |
azoR | EEB85190.1 | RGAI101_2752 | RGAI101_2341 | Fmn-dependent NADH-azoreductase 1; Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity; Belongs to the azoreductase type 1 family. | [C] COG3038 Cytochrome B561; Belongs to the UPF0312 family. | 0.441 |