STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEB82410.1[E] COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog. (311 aa)    
Predicted Functional Partners:
rocF
Arginase; [E] COG0010 Arginase/agmatinase/formimionoglutamate hydrolase, arginase family; Belongs to the arginase family.
 
  
 0.905
EEB82434.1
Aminotransferase, class I and II; [E] COG0436 Aspartate/tyrosine/aromatic aminotransferase.
 
  
 0.847
EEB83680.1
Proline dehydrogenase family protein; Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family. In the N-terminal section; belongs to the proline dehydrogenase family.
  
 
 0.818
EEB85521.1
Decarboxylase, pyridoxal-dependent; [E] COG0019 Diaminopimelate decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
  
 
 0.728
proC
Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
   
 
 0.718
alr
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
     
 0.709
sgaA
[E] COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase.
    
  0.695
EEB85401.1
Ornithine cyclodeaminase/mu-crystallin family protein; [E] COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog.
  
  
 
0.583
artI
Arginine-binding periplasmic protein 1; [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
       0.581
EEB82459.1
Transcriptional Regulator, XRE family with Cupin sensor domain; [K] COG1396 Predicted transcriptional regulators.
    
  0.572
Your Current Organism:
Roseobacter sp. GAI101
NCBI taxonomy Id: 391589
Other names: R. sp. GAI101
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