STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EEB83481.1AAA ATPase; [O] COG0606 Predicted ATPase with chaperone activity. (435 aa)    
Predicted Functional Partners:
EEB83582.1
Type II/IV secretion system protein, TadC subfamily; [NU] COG2064 Flp pilus assembly protein TadC.
 
    0.930
EEB84957.1
Type II/IV secretion system protein, TadC subfamily; [U] COG4965 Flp pilus assembly protein TadB.
 
    0.920
EEB84593.1
TPR domain protein.
 
     0.911
EEB85014.1
Response regulator receiver protein; [D] COG2894 Septum formation inhibitor-activating ATPase.
 
    0.909
EEB85945.1
Peptidase A24A, prepilin type IV; [OU] COG4960 Flp pilus assembly protein, protease CpaA.
 
     0.880
EEB83343.1
TPR domain protein; [R] COG0457 FOG: TPR repeat.
 
     0.872
cpaB
Flp pilus assembly protein CpaB; [M] COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase.
 
    0.864
EEB84120.1
Type II/IV secretion system protein, TadA subfamily; [NU] COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB.
 
     0.833
EEB85393.1
Bacterial type II/III secretion system protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit; Belongs to the bacterial secretin family.
 
     0.825
EEB83970.1
Type II secretion system protein; [NU] COG2064 Flp pilus assembly protein TadC; overlaps another CDS with the same product name.
 
    0.783
Your Current Organism:
Roseobacter sp. GAI101
NCBI taxonomy Id: 391589
Other names: R. sp. GAI101
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