STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEB83538.1Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit. (315 aa)    
Predicted Functional Partners:
EEB85039.1
Peptide/opine/nickel uptake family ABC transporter, permease/ATP-binding protein; [R] COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase; Belongs to the binding-protein-dependent transport system permease family.
 
     0.851
EEB85447.1
Bacterial extracellular solute-binding protein, family 5; [E] COG0747 ABC-type dipeptide transport system, periplasmic component.
 
     0.693
EEB83562.1
[EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
       0.628
EEB83807.1
Dipeptide ABC transporter substrate-binding protein; [E] COG0747 ABC-type dipeptide transport system, periplasmic component.
 
     0.433
EEB83703.1
Integral membrane protein DUF6; [C] COG0374 Ni,Fe-hydrogenase I large subunit.
  
     0.410
EEB85060.1
Patatin; [R] COG1752 Predicted esterase of the alpha-beta hydrolase superfamily.
    
 0.407
Your Current Organism:
Roseobacter sp. GAI101
NCBI taxonomy Id: 391589
Other names: R. sp. GAI101
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.