Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EEB82427.1Hypothetical protein; [Q] COG2931 RTX toxins and related Ca2+-binding proteins; hemolysin-type calcium-binding region. (210 aa)    
Predicted Functional Partners:
EEB82779.1
Hemolysin-type calcium-binding protein; [Q] COG2931 RTX toxins and related Ca2+-binding proteins.
  
 
  0.872
EEB84063.1
[N] COG5651 PPE-repeat proteins; hemolysin-type calcium-binding region.
  
 
  0.862
EEB82384.1
Putative outer membrane adhesin like protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
     0.833
EEB83012.1
Glycerophosphoryl diester phosphodiesterase; [Q] COG2931 RTX toxins and related Ca2+-binding proteins.
  
     0.774
EEB85465.1
Hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit; hemolysin-type calcium-binding region.
  
     0.774
EEB85481.1
Type I secretion target repeat protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.774
EEB83762.1
Hemolysin-type calcium-binding protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.771
EEB86118.1
Hypothetical protein; [Q] COG2931 RTX toxins and related Ca2+-binding proteins; hemolysin-type calcium-binding region.
  
     0.759
EEB86285.1
Type I secretion target GGXGXDXXX repeat protein domain protein; [Q] COG2931 RTX toxins and related Ca2+-binding proteins.
  
     0.690
EEB82644.1
HlyD family secretion protein; [M] COG0845 Membrane-fusion protein.
  
    0.650
Your Current Organism:
Roseobacter sp. GAI101
NCBI taxonomy Id: 391589
Other names: R. sp. GAI101
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