Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RGAI101_7Integrase, catalytic region; [L] COG2801 Transposase and inactivated derivatives. (266 aa)    
Predicted Functional Partners:
RGAI101_3
Hypothetical protein; [L] COG2963 Transposase and inactivated derivatives; transposase and inactivated derivative.
     0.785
EEB82407.1
Transposase; [L] COG4584 Transposase and inactivated derivatives.
  
    0.441
entB
Isochorismatase; [Q] COG1335 Amidases related to nicotinamidase.
    
   0.426
Your Current Organism:
Roseobacter sp. GAI101
NCBI taxonomy Id: 391589
Other names: R. sp. GAI101
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