Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EEB83595.1Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit. (71 aa)    
Predicted Functional Partners:
EEB84477.1
[L] COG3569 Topoisomerase IB.
 
     0.916
EEB86147.1
Conserved hypothetical protein, putative; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.621
EEB85428.1
Conserved hypothetical protein; [S] COG2323 Predicted membrane protein.
  
     0.594
EEB83617.1
[P] COG2116 Formate/nitrite family of transporters.
 
     0.589
EEB84193.1
[E] COG1174 ABC-type proline/glycine betaine transport systems, permease component.
       0.581
EEB84753.1
Sulfonate ABC transporter, ATP-binding protein; [G] COG3839 ABC-type sugar transport systems, ATPase components.
       0.581
EEB83990.1
Sulfonate ABC transporter, periplamic sulfonate-binding protein; [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components.
       0.452
EEB84989.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.444
EEB83329.1
[S] COG4850 Uncharacterized conserved protein.
  
     0.435
Your Current Organism:
Roseobacter sp. GAI101
NCBI taxonomy Id: 391589
Other names: R. sp. GAI101
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