Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
dinFDNA-damage-inducible protein F; [V] COG0534 Na+-driven multidrug efflux pump. (454 aa)    
Predicted Functional Partners:
EEB83271.1
Thioesterase superfamily protein; [Q] COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism.
 
     0.857
EEB86225.1
Thioesterase family protein; [Q] COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism.
       0.833
EEB84433.1
Transcriptional regulator, MerR family; [K] COG0789 Predicted transcriptional regulators.
     
 0.668
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
 
  0.650
hrpB
ATP-dependent helicase HrpB; [L] COG4581 Superfamily II RNA helicase.
     
  0.646
EEB84581.1
Phosphate acetyltransferase; [C] COG0280 Phosphotransacetylase.
  
 
  0.560
paaN
Phenylacetic acid degradation protein paaN; [C] COG1012 NAD-dependent aldehyde dehydrogenases.
  
 
  0.548
EEB85208.1
MaoC family protein; [I] COG2030 Acyl dehydratase.
   
 
  0.544
EEB85573.1
Peroxisomal multifunctional enzyme type 2; [I] COG2030 Acyl dehydratase.
   
 
  0.544
EEB86236.1
MaoC domain protein; [I] COG2030 Acyl dehydratase.
   
 
  0.544
Your Current Organism:
Roseobacter sp. GAI101
NCBI taxonomy Id: 391589
Other names: R. sp. GAI101
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