STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EEB83627.1Short chain oxidoreductase; [IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases). (101 aa)    
Predicted Functional Partners:
EEB86171.1
Short-chain dehydrogenase/reductase SDR; [IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
   
  0.878
EEB86303.1
Glutamate synthase domain family protein; [C] COG2218 Formylmethanofuran dehydrogenase subunit C.
    
  0.759
EEB85234.1
[GEPR] COG0477 Permeases of the major facilitator superfamily.
       0.746
bcsA_2
[I] COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III.
  
 
  0.705
bcsA_1
[I] COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III.
  
 
  0.704
EEB83808.1
Non-ribosomal peptide synthetase, putative; [IQ] COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
  
 
 0.704
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
     
  0.655
EEB82368.1
Putative short-chain dehydrogenase/oxidoreductase; [IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
  
 
  0.648
EEB84331.1
Major facilitator superfamily protein; [G] COG2814 Arabinose efflux permease.
       0.639
araJ
Major facilitator family transporter; [G] COG2814 Arabinose efflux permease.
       0.639
Your Current Organism:
Roseobacter sp. GAI101
NCBI taxonomy Id: 391589
Other names: R. sp. GAI101
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