STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
fucAL-fuculose phosphate aldolase; [G] COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases. (215 aa)    
Predicted Functional Partners:
EEB84065.1
YgbK domain protein; [S] COG3395 Uncharacterized protein conserved in bacteria.
  
 0.989
garR
2-hydroxy-3-oxopropionate reductase; [G] COG0362 6-phosphogluconate dehydrogenase.
 
  
 0.906
EEB83676.1
Hydroxypyruvate isomerase; [H] COG0117 Pyrimidine deaminase; Belongs to the hyi family.
 
  
 0.903
tpiA
Triose-phosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.
    
 0.833
xylB
Xylulokinase; [G] COG1070 Sugar (pentulose and hexulose) kinases.
  
 
 0.818
EEB85894.1
Tripartite ATP-independent periplasmic transporter, DctQ component; [G] COG3090 TRAP-type C4-dicarboxylate transport system, small permease component.
 
     0.814
EEB86191.1
Trap dicarboxylate transporter- dctm subunit; [R] COG4666 TRAP-type uncharacterized transport system, fused permease components.
       0.773
mclA
[G] COG2301 Citrate lyase beta subunit; Belongs to the HpcH/HpaI aldolase family.
   
    0.737
citE
[G] COG2301 Citrate lyase beta subunit; Belongs to the HpcH/HpaI aldolase family.
   
    0.737
EEB85068.1
Fructose-bisphosphate aldolase class-I; [G] COG3588 Fructose-1,6-bisphosphate aldolase.
     
  0.732
Your Current Organism:
Roseobacter sp. GAI101
NCBI taxonomy Id: 391589
Other names: R. sp. GAI101
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