Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
EEB82437.1Conserved hypothetical protein. (58 aa)    
Predicted Functional Partners:
EEB83808.1
Non-ribosomal peptide synthetase, putative; [IQ] COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
    
 0.906
EEB82389.1
FAD-dependent pyridine nucleotide-disulphide oxidoreductase; [C] COG1148 Heterodisulfide reductase, subunit A and related polyferredoxins.
       0.773
EEB82415.1
Integral membrane transport protein; [GEPR] COG0477 Permeases of the major facilitator superfamily; overlaps another CDS with the same product name.
       0.773
EEB82417.1
Integral membrane transport protein; [GEPR] COG0477 Permeases of the major facilitator superfamily; overlaps another CDS with the same product name.
       0.773
EEB86470.1
Bacterial luciferase family protein; [C] COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases.
     
 0.660
EEB82550.1
Hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
     
 0.658
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
     
 0.654
RGAI101_4
Transposase; [L] COG3316 Transposase and inactivated derivatives.
       0.651
EEB82413.1
Transposase; [L] COG3316 Transposase and inactivated derivatives.
       0.638
entB
Isochorismatase; [Q] COG1335 Amidases related to nicotinamidase.
   
 
 0.603
Your Current Organism:
Roseobacter sp. GAI101
NCBI taxonomy Id: 391589
Other names: R. sp. GAI101
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