STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
mmsB_2[I] COG2084 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases; Belongs to the HIBADH-related family. (293 aa)    
Predicted Functional Partners:
EEB84633.1
enoyl-CoA hydratase/isomerase family protein; [I] COG1024 Enoyl-CoA hydratase/carnithine racemase.
 
  0.991
mmsA
[C] COG1012 NAD-dependent aldehyde dehydrogenases.
 
 
  0.948
acaD
[I] COG1960 Acyl-CoA dehydrogenases.
 
 
  0.866
gltA_1
[C] COG0372 Citrate synthase; Belongs to the citrate synthase family.
  
 
 0.681
EEB83590.1
[C] COG1012 NAD-dependent aldehyde dehydrogenases.
  
 
  0.674
mccB
[I] COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta).
 
  
  0.664
uca
Urea carboxylase; [I] COG0511 Biotin carboxyl carrier protein.
  
 
  0.660
EEB84581.1
Phosphate acetyltransferase; [C] COG0280 Phosphotransacetylase.
     
 0.654
sucB
Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2).
     
 0.653
EEB84769.1
Oxidoreductase, zinc-binding dehydrogenase family; [R] COG1064 Zn-dependent alcohol dehydrogenases.
     
  0.653
Your Current Organism:
Roseobacter sp. GAI101
NCBI taxonomy Id: 391589
Other names: R. sp. GAI101
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