Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EEB83671.1Rubrerythrin; [S] COG1633 Uncharacterized conserved protein. (324 aa)    
Predicted Functional Partners:
EEB84668.1
Auxin Efflux Carrier; [R] COG0679 Predicted permeases.
       0.691
EEB85756.1
YaiI/YqxD family protein; [S] COG1671 Uncharacterized protein conserved in bacteria; Belongs to the UPF0178 family.
       0.562
EEB84760.1
Transcriptional regulator, TetR family; [K] COG1309 Transcriptional regulator.
       0.549
fghA
S-formylglutathione hydrolase; Serine hydrolase involved in the detoxification of formaldehyde.
       0.538
bfr
Bacterioferritin; Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex; Belongs to the bacterioferritin family.
    
 0.534
EEB83015.1
HAD-superfamily hydrolase, subfamily IA, variant 1 family protein; [R] COG1011 Predicted hydrolase (HAD superfamily).
       0.523
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
     
 0.512
EEB85401.1
Ornithine cyclodeaminase/mu-crystallin family protein; [E] COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog.
       0.511
moaD
[H] COG1977 Molybdopterin converting factor, small subunit.
     
  0.476
nifS
[E] COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes.
     
  0.476
Your Current Organism:
Roseobacter sp. GAI101
NCBI taxonomy Id: 391589
Other names: R. sp. GAI101
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