STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EEB83676.1Hydroxypyruvate isomerase; [H] COG0117 Pyrimidine deaminase; Belongs to the hyi family. (257 aa)    
Predicted Functional Partners:
garR
2-hydroxy-3-oxopropionate reductase; [G] COG0362 6-phosphogluconate dehydrogenase.
 
 0.938
EEB84065.1
YgbK domain protein; [S] COG3395 Uncharacterized protein conserved in bacteria.
 
  
 0.925
fucA
L-fuculose phosphate aldolase; [G] COG0235 Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases.
 
  
 0.903
EEB85894.1
Tripartite ATP-independent periplasmic transporter, DctQ component; [G] COG3090 TRAP-type C4-dicarboxylate transport system, small permease component.
       0.782
EEB86191.1
Trap dicarboxylate transporter- dctm subunit; [R] COG4666 TRAP-type uncharacterized transport system, fused permease components.
       0.773
mmsB_1
[G] COG0362 6-phosphogluconate dehydrogenase.
 
 0.676
sgaA
[E] COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase.
     
  0.653
EEB86095.1
Trap dicarboxylate transporter, dctp subunit; [G] COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
     0.598
EEB86356.1
Putative 2-hydroxyacid dehydrogenase YcdW; [CHR] COG1052 Lactate dehydrogenase and related dehydrogenases.
  
 
  0.567
EEB82915.1
D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; [HE] COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases.
  
 
  0.567
Your Current Organism:
Roseobacter sp. GAI101
NCBI taxonomy Id: 391589
Other names: R. sp. GAI101
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