STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM24207.1Sodium/calcium exchanger membrane region; COG0387 Ca2+/H+ antiporter. (371 aa)    
Predicted Functional Partners:
EDM24211.1
Acriflavin resistance protein; COG0841 Cation/multidrug efflux pump; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
    0.782
EDM24209.1
ATPase; COG0465 ATP-dependent Zn proteases; Belongs to the AAA ATPase family.
  
    0.775
EDM24208.1
Hypothetical protein.
       0.773
mtaB
MiaB-like tRNA modifying enzyme; COG0621 2-methylthioadenine synthetase.
       0.773
EDM24212.1
Hypothetical protein; COG0419 ATPase involved in DNA repair.
       0.693
mraW
S-adenosyl-methyltransferase MraW; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.
       0.693
EDM22981.1
Putative outer membrane component of efflux system; COG1538 Outer membrane protein.
  
     0.582
EDM24206.1
Twin-arginine translocation pathway signal; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
       0.536
recG
DEAD/DEAH box helicase-like protein; COG1200 RecG-like helicase.
       0.528
EDM23852.1
Cation-transport ATPase, E1-E2 family protein; COG0474 Cation transport ATPase.
  
 
 
 0.526
Your Current Organism:
Caminibacter mediatlanticus
NCBI taxonomy Id: 391592
Other names: C. mediatlanticus TB-2, Caminibacter mediatlanticus DSM 16658, Caminibacter mediatlanticus TB-2, Caminibacter mediatlanticus str. TB-2, Caminibacter mediatlanticus strain TB-2
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