STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM24565.1NADH dehydrogenase (quinone); COG0651 Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit. (655 aa)    
Predicted Functional Partners:
EDM24561.1
HYDROGENASE 4 SUBUNIT; COG3262 Ni,Fe-hydrogenase III component G.
 
 
 0.999
EDM24564.1
HYDROGENASE-4 COMPONENT C; COG0650 Formate hydrogenlyase subunit 4.
 
 
 0.990
EDM24562.1
HYDROGENASE 4 MEMBRANE SUBUNIT; COG0651 Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit.
 
   
0.975
hyfE
COG4237 Hydrogenase 4 membrane component (E).
 
  
 0.946
EDM23235.1
COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit.
 
 
0.946
EDM24036.1
Hydrogenase, EchA subunit; COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit.
 
 
0.945
nuoB
COG3260 Ni,Fe-hydrogenase III small subunit.
 
 
 0.944
EDM23230.1
COG0852 NADH:ubiquinone oxidoreductase 27 kD subunit.
  
 
 0.891
EDM24557.1
Hypothetical protein; COG0680 Ni,Fe-hydrogenase maturation factor.
 
  
 0.882
EDM24560.1
COG1143 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I).
 
 
 0.855
Your Current Organism:
Caminibacter mediatlanticus
NCBI taxonomy Id: 391592
Other names: C. mediatlanticus TB-2, Caminibacter mediatlanticus DSM 16658, Caminibacter mediatlanticus TB-2, Caminibacter mediatlanticus str. TB-2, Caminibacter mediatlanticus strain TB-2
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