Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EDM23967.1 | EDM23968.1 | CMTB2_06926 | CMTB2_06931 | Hypothetical protein. | COG0840 Methyl-accepting chemotaxis protein. | 0.572 |
EDM23967.1 | EDM23969.1 | CMTB2_06926 | CMTB2_06936 | Hypothetical protein. | Hypothetical protein; COG2199 FOG: GGDEF domain. | 0.543 |
EDM23967.1 | EDM23975.1 | CMTB2_06926 | CMTB2_06966 | Hypothetical protein. | COG0840 Methyl-accepting chemotaxis protein. | 0.403 |
EDM23967.1 | alr | CMTB2_06926 | CMTB2_06956 | Hypothetical protein. | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | 0.403 |
EDM23967.1 | gap-2 | CMTB2_06926 | CMTB2_06921 | Hypothetical protein. | Glyceraldehyde-3-phosphate dehydrogenase, type I; COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. | 0.538 |
EDM23967.1 | rpsF | CMTB2_06926 | CMTB2_06941 | Hypothetical protein. | 30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.412 |
EDM23967.1 | rpsR | CMTB2_06926 | CMTB2_06951 | Hypothetical protein. | 30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. | 0.403 |
EDM23967.1 | ssb | CMTB2_06926 | CMTB2_06946 | Hypothetical protein. | Single-strand DNA-binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. | 0.412 |
EDM23967.1 | xseA | CMTB2_06926 | CMTB2_06961 | Hypothetical protein. | Exodeoxyribonuclease VII large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family. | 0.403 |
EDM23968.1 | EDM23967.1 | CMTB2_06931 | CMTB2_06926 | COG0840 Methyl-accepting chemotaxis protein. | Hypothetical protein. | 0.572 |
EDM23968.1 | EDM23969.1 | CMTB2_06931 | CMTB2_06936 | COG0840 Methyl-accepting chemotaxis protein. | Hypothetical protein; COG2199 FOG: GGDEF domain. | 0.959 |
EDM23968.1 | EDM23975.1 | CMTB2_06931 | CMTB2_06966 | COG0840 Methyl-accepting chemotaxis protein. | COG0840 Methyl-accepting chemotaxis protein. | 0.577 |
EDM23968.1 | alr | CMTB2_06931 | CMTB2_06956 | COG0840 Methyl-accepting chemotaxis protein. | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | 0.555 |
EDM23968.1 | gap-2 | CMTB2_06931 | CMTB2_06921 | COG0840 Methyl-accepting chemotaxis protein. | Glyceraldehyde-3-phosphate dehydrogenase, type I; COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. | 0.411 |
EDM23968.1 | rpsF | CMTB2_06931 | CMTB2_06941 | COG0840 Methyl-accepting chemotaxis protein. | 30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.544 |
EDM23968.1 | rpsR | CMTB2_06931 | CMTB2_06951 | COG0840 Methyl-accepting chemotaxis protein. | 30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. | 0.526 |
EDM23968.1 | ssb | CMTB2_06931 | CMTB2_06946 | COG0840 Methyl-accepting chemotaxis protein. | Single-strand DNA-binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. | 0.540 |
EDM23968.1 | xseA | CMTB2_06931 | CMTB2_06961 | COG0840 Methyl-accepting chemotaxis protein. | Exodeoxyribonuclease VII large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family. | 0.539 |
EDM23969.1 | EDM23967.1 | CMTB2_06936 | CMTB2_06926 | Hypothetical protein; COG2199 FOG: GGDEF domain. | Hypothetical protein. | 0.543 |
EDM23969.1 | EDM23968.1 | CMTB2_06936 | CMTB2_06931 | Hypothetical protein; COG2199 FOG: GGDEF domain. | COG0840 Methyl-accepting chemotaxis protein. | 0.959 |
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