STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM23405.1COG0546 Predicted phosphatases. (214 aa)    
Predicted Functional Partners:
EDM24263.1
FAD linked oxidase-like protein; COG0277 FAD/FMN-containing dehydrogenases.
    
 0.909
EDM23673.1
COG1052 Lactate dehydrogenase and related dehydrogenases; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
    
  0.900
EDM23989.1
Hypothetical protein; COG0247 Fe-S oxidoreductase.
     
 0.900
EDM23404.1
Hypothetical protein.
 
     0.846
katG
Catalase; Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity; Belongs to the peroxidase family. Peroxidase/catalase subfamily.
       0.620
rpe
COG0036 Pentose-5-phosphate-3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
  
  
 0.588
moaA
Molybdenum cofactor biosynthesis protein A; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate.
  
    0.582
ribB
Bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate. Belongs to the DHBP synthase family.
  
  
 0.511
EDM23407.1
Hypothetical protein; COG0376 Catalase (peroxidase I).
       0.413
Your Current Organism:
Caminibacter mediatlanticus
NCBI taxonomy Id: 391592
Other names: C. mediatlanticus TB-2, Caminibacter mediatlanticus DSM 16658, Caminibacter mediatlanticus TB-2, Caminibacter mediatlanticus str. TB-2, Caminibacter mediatlanticus strain TB-2
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