STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM23416.1General secretion pathway protein F; COG1459 Type II secretory pathway, component PulF. (397 aa)    
Predicted Functional Partners:
EDM23417.1
Hypothetical protein; COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB.
 
 
 0.987
EDM24370.1
COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB.
 
 
 0.945
EDM24369.1
Msha biogenesis protein mshg; COG1459 Type II secretory pathway, component PulF.
  
  
 
0.927
EDM23418.1
Type II and III secretion system protein:NolW-like protein; COG1450 Type II secretory pathway, component PulD.
 
  
 0.920
gspG
General secretion pathway protein G; COG2165 Type II secretory pathway, pseudopilin PulG.
 
  
 0.868
EDM23419.1
Hypothetical protein; COG3031 Type II secretory pathway, component PulC.
 
  
 0.841
EDM24394.1
Peptidase A24A-like protein; COG1989 Type II secretory pathway, prepilin signal peptidase PulO and related peptidases.
 
  
 0.839
EDM24104.1
Pilin biogenesis; COG2805 Tfp pilus assembly protein, pilus retraction ATPase PilT.
 
  
 0.786
EDM24365.1
Twitching motility protein; COG2805 Tfp pilus assembly protein, pilus retraction ATPase PilT.
 
  
 0.779
EDM23420.1
Hypothetical protein.
       0.773
Your Current Organism:
Caminibacter mediatlanticus
NCBI taxonomy Id: 391592
Other names: C. mediatlanticus TB-2, Caminibacter mediatlanticus DSM 16658, Caminibacter mediatlanticus TB-2, Caminibacter mediatlanticus str. TB-2, Caminibacter mediatlanticus strain TB-2
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