STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dctP9Putative TRAP transporter subunit DctP. (329 aa)    
Predicted Functional Partners:
dctM16
TRAP transporter subunit DctM.
 
 
 0.990
AEI92066.1
Hypothetical protein.
 
    0.921
AEI92068.1
Hypothetical protein.
 
     0.825
AEI92062.1
Hypothetical protein.
 
     0.819
AEI92064.1
FAD dependent oxidoreductase.
 
     0.817
AEI92063.1
Hypothetical protein.
 
     0.778
AEI92069.1
Putative allophanate hydrolase subunit 1.
       0.603
AEI92784.1
Putative TRAP transporter subunit DctQ.
 
    0.494
AEI92070.1
Putative allophanate hydrolase subunit 2.
       0.491
AEI92071.1
LamB/YcsF family protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.
       0.477
Your Current Organism:
Roseobacter litoralis
NCBI taxonomy Id: 391595
Other names: R. litoralis Och 149, Roseobacter litoralis Och 149, Roseobacter litoralis str. Och 149, Roseobacter litoralis strain Och 149
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.