STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEI92347.1Putative HlyD family secretion protein. (435 aa)    
Predicted Functional Partners:
AEI92349.1
Putative outer membrane protein, TolC family.
 
 
 0.974
AEI92348.1
ABC transporter ATP-binding protein.
 
 0.967
AEI92090.1
Putative ABC transporter ATP-binding protein.
 
 0.859
AEI92733.1
Putative ABC transporter ATP-binding protein.
 
 0.855
AEI92732.1
ABC transporter ATP-binding protein.
 
 0.837
AEI92089.1
Putative ABC transporter ATP-binding protein.
 
 0.796
AEI94953.1
Proteases secretion ATP-binding protein.
  
 0.785
AEI92468.1
Hypothetical protein.
 
  
 0.722
AEI95703.1
Hypothetical protein.
 
  
 0.701
AEI92712.1
Hypothetical protein.
 
  
 0.700
Your Current Organism:
Roseobacter litoralis
NCBI taxonomy Id: 391595
Other names: R. litoralis Och 149, Roseobacter litoralis Och 149, Roseobacter litoralis str. Och 149, Roseobacter litoralis strain Och 149
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.