STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dctP13TRAP transporter subunit DctP; Part of the tripartite ATP-independent periplasmic (TRAP) transport system. (366 aa)    
Predicted Functional Partners:
AEI92701.1
TRAP transporter DctQ-like protein.
 
    0.898
dctM6
TRAP transporter subunit DctM.
 
  
 0.897
dctM15
TRAP transporter subunit DctM.
 
  
 0.671
dctM13
TRAP transporter subunit DctM.
 
  
 0.615
dctQ5
TRAP transporter subunit DctQ.
 
    0.542
AEI93625.1
Putative extracellular solute-binding protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
  
  
 
0.509
dctP7
Putative TRAP transporter subunit DctP; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
  
  
 
0.481
Your Current Organism:
Roseobacter litoralis
NCBI taxonomy Id: 391595
Other names: R. litoralis Och 149, Roseobacter litoralis Och 149, Roseobacter litoralis str. Och 149, Roseobacter litoralis strain Och 149
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.