STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEI92894.1Hypothetical protein. (273 aa)    
Predicted Functional Partners:
flgK
Putative flagellar-hook associated protein FlgK; Belongs to the flagella basal body rod proteins family.
  
    0.640
AEI96290.1
Transposase.
  
     0.482
AEI96301.1
Transposase.
  
     0.482
AEI92942.1
Putative integrase.
  
     0.454
AEI92895.1
Hypothetical protein.
       0.437
serB
Phosphoserine phosphatase SerB.
  
  
 0.421
aoxA
Arsenite oxidase small subunit AoxA.
  
     0.403
Your Current Organism:
Roseobacter litoralis
NCBI taxonomy Id: 391595
Other names: R. litoralis Och 149, Roseobacter litoralis Och 149, Roseobacter litoralis str. Och 149, Roseobacter litoralis strain Och 149
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.