Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AEI92802.1 | betB | RLO149_c007750 | RLO149_c011680 | Putative aminotransferase class III, with aminoglycoside phosphotransferase and peptidase activity. | Betaine aldehyde dehydrogenase BetB; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the reversible oxidation of betaine aldehyde to the corresponding acid. | 0.562 |
AEI93173.1 | AEI93175.1 | RLO149_c011690 | RLO149_c011710 | Hypothetical protein. | Nuclease-like protein. | 0.537 |
AEI93173.1 | betA | RLO149_c011690 | RLO149_c011700 | Hypothetical protein. | Choline dehydrogenase BetA; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate. | 0.763 |
AEI93173.1 | betB | RLO149_c011690 | RLO149_c011680 | Hypothetical protein. | Betaine aldehyde dehydrogenase BetB; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the reversible oxidation of betaine aldehyde to the corresponding acid. | 0.773 |
AEI93173.1 | betC | RLO149_c011690 | RLO149_c011670 | Hypothetical protein. | Choline-sulfatase BetC. | 0.642 |
AEI93173.1 | betI | RLO149_c011690 | RLO149_c011660 | Hypothetical protein. | HTH-type transcriptional regulator BetI; Repressor involved in choline regulation of the bet genes. | 0.656 |
AEI93175.1 | AEI93173.1 | RLO149_c011710 | RLO149_c011690 | Nuclease-like protein. | Hypothetical protein. | 0.537 |
AEI93175.1 | betA | RLO149_c011710 | RLO149_c011700 | Nuclease-like protein. | Choline dehydrogenase BetA; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate. | 0.556 |
AEI93175.1 | betB | RLO149_c011710 | RLO149_c011680 | Nuclease-like protein. | Betaine aldehyde dehydrogenase BetB; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the reversible oxidation of betaine aldehyde to the corresponding acid. | 0.571 |
AEI93175.1 | betC | RLO149_c011710 | RLO149_c011670 | Nuclease-like protein. | Choline-sulfatase BetC. | 0.454 |
AEI93175.1 | betI | RLO149_c011710 | RLO149_c011660 | Nuclease-like protein. | HTH-type transcriptional regulator BetI; Repressor involved in choline regulation of the bet genes. | 0.562 |
AEI93617.1 | alkJ1 | RLO149_c016240 | RLO149_c005740 | Putative aromatic-ring-hydroxylating dioxygenase. | Alcohol dehydrogenase AlkJ. | 0.905 |
AEI93617.1 | alkJ2 | RLO149_c016240 | RLO149_c003730 | Putative aromatic-ring-hydroxylating dioxygenase. | Alcohol dehydrogenase AlkJ. | 0.905 |
AEI93617.1 | betA | RLO149_c016240 | RLO149_c011700 | Putative aromatic-ring-hydroxylating dioxygenase. | Choline dehydrogenase BetA; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate. | 0.905 |
AEI93617.1 | betB | RLO149_c016240 | RLO149_c011680 | Putative aromatic-ring-hydroxylating dioxygenase. | Betaine aldehyde dehydrogenase BetB; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the reversible oxidation of betaine aldehyde to the corresponding acid. | 0.905 |
alkJ1 | AEI93617.1 | RLO149_c005740 | RLO149_c016240 | Alcohol dehydrogenase AlkJ. | Putative aromatic-ring-hydroxylating dioxygenase. | 0.905 |
alkJ1 | alkJ2 | RLO149_c005740 | RLO149_c003730 | Alcohol dehydrogenase AlkJ. | Alcohol dehydrogenase AlkJ. | 0.907 |
alkJ1 | betA | RLO149_c005740 | RLO149_c011700 | Alcohol dehydrogenase AlkJ. | Choline dehydrogenase BetA; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate. | 0.912 |
alkJ1 | betB | RLO149_c005740 | RLO149_c011680 | Alcohol dehydrogenase AlkJ. | Betaine aldehyde dehydrogenase BetB; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the reversible oxidation of betaine aldehyde to the corresponding acid. | 0.952 |
alkJ1 | betI | RLO149_c005740 | RLO149_c011660 | Alcohol dehydrogenase AlkJ. | HTH-type transcriptional regulator BetI; Repressor involved in choline regulation of the bet genes. | 0.589 |
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