STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEI93400.1Putative gene transfer agent protein. (73 aa)    
Predicted Functional Partners:
AEI93399.1
Putative gene transfer agent portal protein.
 
     0.905
AEI93401.1
Putative gene transfer prohead protease.
 
     0.887
AEI93403.1
Putative gene transfer agent protein.
 
     0.840
AEI93402.1
Putative gene transfer agent major capsid protein.
 
     0.791
AEI93404.1
Putative gene transfer agent head-tail adaptor.
 
     0.776
AEI93405.1
Putative gene transfer agent protein.
 
     0.774
AEI93409.1
Putative gene transfer agent protein.
 
     0.758
AEI93407.1
Putative gene transfer agent protein.
 
     0.743
AEI93406.1
Putative gene transfer agent major tail protein.
 
     0.729
AEI93411.1
Putative gene transfer agent protein.
 
     0.720
Your Current Organism:
Roseobacter litoralis
NCBI taxonomy Id: 391595
Other names: R. litoralis Och 149, Roseobacter litoralis Och 149, Roseobacter litoralis str. Och 149, Roseobacter litoralis strain Och 149
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