STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEI93593.1DNA binding helix-turn helix-like protein. (429 aa)    
Predicted Functional Partners:
AEI93595.1
Hypothetical protein.
 
     0.801
AEI93596.1
Sensor transduction histidine kinase.
 
   
 0.789
AEI93594.1
Putative response regulator receiver protein, CheY like protein.
 
   
 0.735
AEI93592.1
Hypothetical protein.
 
     0.630
AEI93597.1
Hypothetical protein.
 
     0.590
AEI93438.1
Putative HTH-type transcriptional regulator, lysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.577
AEI92997.1
Hypothetical protein; Associated with PHB synthesis.
  
     0.496
glcB
Malate synthase G; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily.
 
   
 0.494
AEI93633.1
Hypothetical protein.
  
     0.473
AEI93590.1
Putative branched-chain amino acid transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
     0.468
Your Current Organism:
Roseobacter litoralis
NCBI taxonomy Id: 391595
Other names: R. litoralis Och 149, Roseobacter litoralis Och 149, Roseobacter litoralis str. Och 149, Roseobacter litoralis strain Och 149
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