STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEI93839.1Hypothetical protein. (217 aa)    
Predicted Functional Partners:
AEI93837.1
Hypothetical protein.
       0.869
AEI93838.1
Hypothetical protein.
       0.869
sufB
Protein SufB.
     
 0.794
AEI93840.1
HTH-type transcriptional regulator Rrf2.
       0.716
sufC
ATP-dependent transporter SufC.
     
 0.708
sufD
Protein SufD.
     
 0.706
bamD
Outer membrane assembly lipoprotein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
 
     0.683
AEI93841.1
Putative cysteine desulfurase.
       0.681
AEI92277.1
Hypothetical protein DUF1013.
  
     0.656
AEI96055.1
TIM44-like protein.
  
     0.645
Your Current Organism:
Roseobacter litoralis
NCBI taxonomy Id: 391595
Other names: R. litoralis Och 149, Roseobacter litoralis Och 149, Roseobacter litoralis str. Och 149, Roseobacter litoralis strain Och 149
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.