STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
soxZProtein SoxZ. (109 aa)    
Predicted Functional Partners:
soxY
Protein SoxY.
 
 
 0.999
soxA1
Diheme cytochrome c.
 
  
 0.998
soxX
Cytochrome c.
 
  
 0.998
soxD4
Sulfite oxidase cytochrome subunit SoxD.
 
  
 0.996
soxC
Sulfite oxidase molybdopterin subunit SoxC.
 
  
 0.996
soxB1
Protein SoxB; Belongs to the 5'-nucleotidase family.
 
 
 0.996
AEI95679.1
Hypothetical protein.
   
 0.975
AEI95689.1
Sulfur oxidation SoxZ-like protein.
   
 0.975
sseA
3-mercaptopyruvate sulfurtransferase SseA.
    
 0.938
soxW
Thioredoxin SoxW.
 
     0.906
Your Current Organism:
Roseobacter litoralis
NCBI taxonomy Id: 391595
Other names: R. litoralis Och 149, Roseobacter litoralis Och 149, Roseobacter litoralis str. Och 149, Roseobacter litoralis strain Och 149
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.