STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
petRProtein PetR. (233 aa)    
Predicted Functional Partners:
AEI94243.1
Histidine kinase.
 
 0.984
ompR
Transcriptional regulator protein OmpR.
  
  
 
0.914
AEI95922.1
Two component signal transduction histidine kinase.
 
 
 0.821
phoR
Alkaline phosphatase synthesis sensor protein PhoR.
 
 0.819
petP
HTH-type transcriptional regulator PetP.
  
  
 0.800
AEI93753.1
Sensor transduction histidine kinase.
 
 0.788
dorS
DMSOR/TMAOR two component sensor histidine kinase DorS.
 
 
 0.753
AEI93751.1
Sensor transduction histidine kinase.
 
  
 0.671
nuoEF
NADH-quinone oxidoreductase subunits NuoEF.
   
 
 0.648
AEI95608.1
Two component signal transduction histidine kinase.
 
 
 0.647
Your Current Organism:
Roseobacter litoralis
NCBI taxonomy Id: 391595
Other names: R. litoralis Och 149, Roseobacter litoralis Och 149, Roseobacter litoralis str. Och 149, Roseobacter litoralis strain Och 149
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.